Field Protocol: You are responding to a novel respiratory cluster.
Resources: You have a $10,000 budget. Clinical samples are cheap; field logistics are expensive.
Time: The outbreak clock advances with every action. Viral shedding decays over time.
Investigation: Conduct epidemiological surveys to uncover upstream exposure sites.
Objective: Reconstruct the transmission chain, download the FASTA, and calculate the tMRCA.
Field Operations
Budget: $10000
Day: 1
Field Log: Day 1: Outbreak detected at local hospital.
Phylogenetic Analysis
Tree will appear here after generation.
Sequence Analysis & Temporal Regression
Upload your FASTA file. The tool will calculate the JC69 distance matrix and perform a root-to-tip linear regression to estimate the molecular clock rate and $t_{MRCA}$.